Protein Information

Protein ZmCA5P17
ZmCA5P17 is a protein in the CCAAT-HAP5 family.
Information
TF Name:	ZmCA5P17
Species:	Maize
TF Family:	CCAAT-HAP5
Gene Name(Synonym):	CA5P17
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

Overview of domains present in v5 transcripts
	NF-YC	PF00125
Zm00001eb407130_T001

Gene ID	Type	Sequence	FIMO	Position
Zm00001d023466	DAPseq	sequence	fimo	position
Zm00001d023466	DAPseq	sequence	fimo	position
Zm00001d023466	ChIPseq	sequence	fimo	position
Zm00001d023466	PChIPseq	sequence	fimo	position

Zm00001eb407130_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard
Color Coding: None Secondary Structure Domain

MDRPINIRTSPRTPLSLSEQQTIKEFWRKKQEEIEAIEDFGEHTIPVTCLKKVICAKKGKMMMTSDTPTFMTKACKIFVQ
ELSLSAWMCANSHNRSIVLDSDIAESIASIESYGFLNDVLCAHLEKYKSDTHLQSIKNPHHNRAINQSPTYLQPLSHQYQ
MTQFIPQSTRYCPFIHIPPTLPQTNDIHMHLPLPLPPITYMTKDLVFFEKGISNNDDAIDLVTPPQLLPEALSNIPNKCY
MCNIASTDTYCVGSAKTCNFIAEDGDMVFHFPYVPSKPFQLSTSLPMTNGGCSIYTDITELNHIKLKVTHIEKSTYGINP
EATFNVIDGQQHAGDETTAANHMHTEHGELDAEFVTTTNANADDNNINWDEVDMASDSMLMEFWRDVMMKEDPTSLPDTI
STNDTILDPSDMLELEGCCDDSYLLDDVMSNTSNDVRHG

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00125
NF-YC
Hover here to show all domains

Nucleotide Sequence
Copy to clipboard

Expand

TCGATCACCAGTTGTGCCTTTTGGA...

GRMZM2G052499_T01 from maize genome v3

Related TFome: pUT3965

Amino Acid Sequence
Copy to clipboard

MDRPINIRTSPRTPLSLSEQQTIKEFWRKKQEEIEAIEDFGEHTIPVTCLKKVICAKKGKMMMTSDTPTFMTKACKIFVQ
ELSLSAWMCANSHNRSIVLDSDIAESIASIESYGFLNDVLCAHLEKYKSDTHLQSIKNPHHNRAINQSPTYLQPLSHQYQ
MTQFIPQSTRYCPFIHIPPTLPQTNDIHMHLPLPLPPITYMTKDLVFFEKGISNNDDAIDLVTPPQLLPEALSNIPNKCY
MCNIASTDTYCVGSAKTCNFIAEDGDMVFHFPYVPSKPFQLSTSLPMTNGGCSIYTDITELNHIKLKVTHIEKSTYGINP
EATFNVIDGQQHAGDETTAANHMHTEHGELDAEFVTTTNANADDNNINWDEVDMASDSMLMEFWRDVMMKEDPTSLPDTI
STNDTILDPSDMLELEGCCDDSYLLDDVMSNTSNDVRHG

Nucleotide Sequence
Copy to clipboard

Expand

GTGAATCTATCAAGACCAAACAAGA...

Zm00001d023466_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

MDRPINIRTSPRTPLSLSEQQTIKEFWRKKQEEIEAIEDFGEHTIPVTCLKKVICAKKGKMMMTSDTPTFMTKACKIFVQ
ELSLSAWMCANSHNRSIVLDSDIAESIASIESYGFLNDVLCAHLEKYKSDTHLQSIKNPHHNRAINQSPTYLQPLSHQYQ
MTQFIPQSTRYCPFIHIPPTLPQTNDIHMHLPLPLPPITYMTKDLVFFEKGISNNDDAIDLVTPPQLLPEALSNIPNKCY
MCNIASTDTYCVGSAKTCNFIAEDGDMVFHFPYVPSKPFQLSTSLPMTNGGCSIYTDITELNHIKLKVTHIEKSTYGINP
EATFNVIDGQQHAGDETTAANHMHTEHGELDAEFVTTTNANADDNNINWDEVDMASDSMLMEFWRDVMMKEDPTSLPDTI
STNDTILDPSDMLELEGCCDDSYLLDDVMSNTSNDVRHG

Nucleotide Sequence
Copy to clipboard

Expand

ATGGATCGTCCTATTAATATCCGTA...

Learn About Grassius

Species

Databases

Tools

Help

Protein ZmCA5P17

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmCA5P17 is the regulator

Interactions where ZmCA5P17 is the target
Expand

Zm00001eb407130_T001 from maize genome v5

Amino Acid Sequence
Copy to clipboard
Color Coding: None Secondary Structure Domain

Nucleotide Sequence
Copy to clipboard

Expand

GRMZM2G052499_T01 from maize genome v3

Amino Acid Sequence
Copy to clipboard

Nucleotide Sequence
Copy to clipboard

Expand

Zm00001d023466_T001 from maize genome v4

Amino Acid Sequence
Copy to clipboard

Nucleotide Sequence
Copy to clipboard

Expand

About Grassius

Access Data

Tools

Help